PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G288800.1
Common NameB456_009G288800, LOC105770407
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 359aa    MW: 40929.7 Da    PI: 8.3596
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G288800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.82.1e-065980223
                        EETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                        +C+ Cg sF+ + +Lk+H+++H
  Gorai.009G288800.1 59 TCEECGASFKKPAYLKQHLQSH 80
                        6*******************99 PP

2zf-C2H216.32.8e-0586110123
                         EEET..TTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                         ++C   dC+ s++rk++L+rH+  H
  Gorai.009G288800.1  86 FVCLveDCHASYRRKDHLTRHLLQH 110
                         789999***************9887 PP

3zf-C2H213.80.00018115140123
                         EEET..TTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                         +kC   +C++ F  + n+krH++  H
  Gorai.009G288800.1 115 FKCLieNCNREFAFQGNMKRHLKEfH 140
                         799999*****************988 PP

4zf-C2H218.74.9e-06155179123
                         EEET..TTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                         y+C+   Cgk+F  ks Lk+H  +H
  Gorai.009G288800.1 155 YVCQevGCGKVFEFKSKLKKHEDSH 179
                         99*******************9888 PP

5zf-C2H215.93.7e-05247271223
                         EET..TTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                         kC+   C  +Fs+ksnL++H +  H
  Gorai.009G288800.1 247 KCNfeGCLHTFSTKSNLRQHVKAvH 271
                         79999***************99877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355201739IPR015880Zinc finger, C2H2-like
SMARTSM003550.0145880IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.365885IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.4E-75979IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002806080IPR007087Zinc finger, C2H2
SuperFamilySSF576671.62E-972112No hitNo description
Gene3DG3DSA:3.30.160.603.2E-1180112IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.05886115IPR007087Zinc finger, C2H2
SMARTSM003550.04786110IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028088110IPR007087Zinc finger, C2H2
SuperFamilySSF576674.53E-6113141No hitNo description
Gene3DG3DSA:3.30.160.601.0E-4113137IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.72115145IPR007087Zinc finger, C2H2
SMARTSM003550.095115140IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280117140IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.1E-7151179IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.57E-5152179No hitNo description
PROSITE profilePS5015711.053155184IPR007087Zinc finger, C2H2
SMARTSM003550.01155179IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280157179IPR007087Zinc finger, C2H2
SMARTSM003551.4187212IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280189212IPR007087Zinc finger, C2H2
SMARTSM0035518215236IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.47E-8228284No hitNo description
PROSITE profilePS5015711.635246276IPR007087Zinc finger, C2H2
SMARTSM003550.0021246271IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.8E-6247271IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280248271IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.0E-4272299IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003558.7277303IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280279303IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MEEEKVGGAI FKDIRRYYCE FCGICRSKKS LINSHILTHH TDEVNKGGKE EEGASSSNTC  60
EECGASFKKP AYLKQHLQSH SLERPFVCLV EDCHASYRRK DHLTRHLLQH QGKLFKCLIE  120
NCNREFAFQG NMKRHLKEFH DEESSDLDAG SQKQYVCQEV GCGKVFEFKS KLKKHEDSHV  180
KLDSVEAFCS EPGCMKYFTN EQCLKAHVLS SHAYINCQIC GAKQLKKNIK RHLRSHEPGG  240
VESERIKCNF EGCLHTFSTK SNLRQHVKAV HEELKPFACS FFGCGMRFSY KHVRDNHEKS  300
GCHVYTPGNF LETDEQFRSK PRGGLKRTCP TVEMLVRKRV TPPQMDATMD LGPAPACS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tf6_D4e-176220719155PROTEIN (TRANSCRIPTION FACTOR IIIA)
1tf6_A4e-176220719155PROTEIN (TRANSCRIPTION FACTOR IIIA)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012447055.10.0PREDICTED: zinc finger protein 782 isoform X1
SwissprotQ84MZ41e-149TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A0D2QPJ90.0A0A0D2QPJ9_G
STRINGPOPTR_0013s11300.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47142852
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-150transcription factor IIIA
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]